Esrf scientific software development

Scientific software development has been characterized as enduser programming segal, 2004, considered a candidate for agile iterative development e. The instrumentation services and development division isdd of the esrf develops various types of functionally complex scientific instrumentation such as high precision positioning systems and the corresponding control equipment and software. Web frontend developer for scientific data euraxess. The beamline database ispyb the need, alluded to above, of industrial clients of the esrfs mx beamlines for robust sample tracking and experiment reporting was one of the driving forces which led to the development and deployment at the esrf in 2001 of pxweb, a prototype lims combining sample tracking and experiment reporting during synchrotronbased mx experiments arzt. Esrf postdoctoral fellows in the matter at extremes group. Scientific software development as professionals in high performance computing and software engineering, oscs staff has deep expertise in developing and deploying software that runs efficiently and correctly on largescale cluster computing platforms. Aurelien bideaud detector software engineer esrf the. The esrf staff and visitors are free to contact us for any problem. Materials science, quality assurance in industrial environments, electronics, digital rock analysis etc.

International collaborations will be paramount for the success of the esrf upgrade programme, and cover many scientific disciplines including instrumentation and computing developments. Armando sole currently works at the division of instrumentation services and development, european synchrotron radiation facility. Computing support is at the service of the scientific and technical programme of the esrf. Esrf is listed in the worlds largest and most authoritative dictionary database of abbreviations and acronyms the free dictionary. The functions are very wide, going from the development of longterm projects to daytoday consulting and troubleshooting.

The main goal of the blissframework is to ease the creation of graphical applications for beamline instrumentation control by providing services to allow the simplified integration and configuration. With one single titration experiment it calculates the kinetic constants kon and koff and the thermodynamic data kd and. Electronics and software for control and data acquisition systems. The esrf offers users a unique array of support services and laboratories for the preparation of experiments, instrumentation and the analysis of resulting data. The esrf employs about 600 staff and is organized as a french societe civile. Kinitc is a new method to obtain kinetic information from isothermal titration calorimetry data. Software design and development for control application. Detector software engineer chez esrf the european synchrotron.

How to develop maintainable software how to avoid scientific software developers wasting time developing nonscientific software e. We have developed a set of software packages, which are particularly useful for exafs data analysis. The current development can be followed on the github page. The european synchrotron radiation facility is a third generation synchrotron light source, jointly funded by 19 european countries. Located in grenoble, france, the esrf owes its success to the international cooperation of 22 partner nations, of. Instead of creating development methodologies specific to different development domains, computer scientists have focused on formulating domainindependent techniques for development. The design and features of a beamline control software system for macromolecular crystallography mx experiments developed at the european synchrotron radiation facility esrf are described. Scientific software developed at the esrf for accelerator physicists. Scientific software developed by the id group esrf.

As most python packages, pyfai is available via pip. The european synchrotron, the esrf, is an international research centre based in grenoble, france. Scientific software development ohio supercomputer center. Manage the daytoday operation and the scientific development of the esrfs massif3 beamline, helping to develop of instrumentation, software and methods that will be important for all of the structural biology groups mx facilities at a postebs esrf.

Familiarity with software development and documentation tools in linux environments good documentation, organisation and analytical skills, flexibility, ability to work within a team a genuine interest in scientific instrumentation software and related techniques will be an asset proficiency in english working language at the esrf. The 4 posts are made of nonbrittle, lowdensity plastic and have two white 3. The esrf is the worlds most intense xray source and a centre of excellence for fundamental and innovationdriven research in condensed and living matter science. How the esrf helps industry and how they help the esrf. Its particle accelerator produces intense xray beams that are used by thousands of. We are currently developing a docking software that will allow obtaining the structure of supramolecular complexes at atomic resolution level as well as an estimation to the gibbs energy corresponding to the most probable conformations.

Through its innovative engineering, pioneering scientific vision and a strong commitment from its 700 staff members, the esrf is recognised as one of the top research facilities worldwide. Dioptas has a very fastgrowing user base and is currently employed for online data processing and post experiment data analysis at carssectors 15, aps, hpcat sector 16, aps, id27 esrf, id9 esrf and ecb p02. It has been developed to run on pcs with a 32bit microsoft windows operating system in. European synchrotron radiation facility 71, avenue des martyrs, cs 40220. Crispy runs on all major operating systems, and is free and opensource software. Manuel sanchez del rio european synchrotron radiation. The experimental techniques available allow for testing in real time and under real operating conditions. Experience in scientific programming and software development. Esrf european synchrotron radiation facility planisware. A read is counted each time someone views a publication summary such as the title, abstract, and list of authors, clicks on a figure, or views or downloads the fulltext. The beamline will be operated jointly with the esrf with the aim of becoming the worlds highest standard for industrial computed tomography ct.

Development of the facility infrastructure hardware and software with a focus on making it compatible with the other automated beamlines to enable insitu and. Located in grenoble, france, the esrf owes its success to the international cooperation of 21 partner nations, of. The esrf is currently engaging in a development programme for the next 10 years referred to as the upgrade programme. It enables users to perform interactive visualization and computation on 3d data sets. Under unix, you may have to run the command via sudo to gain root access an perform a system wide installation. The unit is in charge of maintaining and developing scientific software for the esrf, in relation to online and offline data processing. Goal was to extend the rod surface structure analysis program by elias vlieg, to be able to handle molecules. Jeanmichel chaize program chairman accelerator control unit leader. Manage the daytoday operation and the scientific development of the esrf s massif3 beamline, helping to develop of instrumentation, software and methods that will be important for all of the structural biology groups mx facilities at a postebs esrf. Recover your login and reset your password i have lost my password and my email has changed. The software group has skills in the following areas. The esrf also offers research opportunities for industrial research and development.

Scientific software development viewed as knowledge. A software contract, which has to be signed before use, is here. Academic and industrial user program support for the fragment screening xchemi041 facility. Radia has been heavily benchmarked with a commercially available finite element package. Accelerator control, beamline control and data analysis. The itfa package contains an advanced pca method, which allows to derive the spectra of single species from mixtures. International scientific advisory committee members th. At the esrf, physicists work sidebyside with chemists, materials scientists, biologists etc. The beamline database ispyb the need, alluded to above, of industrial clients of the esrfs mx beamlines for robust sample tracking and experiment reporting was one of the driving forces which led to the development and deployment at the esrf in 2001 of pxweb, a prototype lims combining sample tracking and experiment reporting during synchrotronbased mx experiments arzt et al. Apply to software engineer, full stack developer, paid intern and more. Provide scientific and technical consulting to support optimal system setup and configuration of scientific workflows and recommend best practices. Its main concerns are theoretical physics and accelerator control with the goal of pursuing the ultimate storage ring.

Rainer wilcke, and claudio ferrero of the scientific software group at esrf. Building on many years of preliminary work, you will develop highly optimized algorithms for the reconstruction of largescale volumetric images 210 tbscan. Applications cover scientific fields such as materials science, physics, chemistry, earth and planetary science. It operates a powerful synchrotron xray source with some 30 beamlines instruments covering a wide range of scientific research in fields such as biology and medicine, chemistry, earth and environmental sciences, materials and surface science, and physics. Main issues are how to develop maintainable software how to avoid scientific software developers wasting time developing nonscientific software e. Located in grenoble, france, the esrf owes its success to the international cooperation of 22 partner nations, of which are members and 9 are associates. Interest of the scientific community via a lively mailing list and citation in scientific publication for our software is one of the main criterion for esrf management when deciding if they should continue funding development. European synchrotron radiation facility 71, avenue des martyrs, cs 40220, 38043 grenoble cedex 9, france. Beam dynamics refers to the development, analysis and supervision of the physical aspects of the machine. The software group provides software in the form of development, support. The european synchrotron radiation facility esrf is the most powerful synchrotron radiation source in europe. Documentation european synchrotron radiation facility esrf.

Synchrotron radiation source anka wolfgang mexner, karlheinz cerff, michael wuensch, fzk, germany dominique porte, lilian cardonne, stefan schulze, esrf, france abstract the scientific management information system smis handles around applications for beam time and per proposal round at the european synchrotron radiation facility esrf. It is optimized for the design of undulators and wigglers made with permanent magnets, coils and linearnonlinear soft magnetic materials. Radia is a fast multiplatform software dedicated to 3d magnetostatics computation. This system, mxcube, allows users to easily and simply interact with beamline hardware components and provides automated routines for common tasks in the operation of a synchrotron beamline dedicated to. Postdoctoral fellows in the matter at extremes group. Development of the facility infrastructure hardware and software with a focus on making it compatible with the other automated beamlines to enable insitu and multicrystal data collection on xchem samples. Apply to scientific software developer jobs now hiring on. Each year several thousand researchers travel to grenoble, where they work in a firstclass scientific environment to conduct exciting experiments at the cutting edge. Major companies in the fields of pharmaceuticals, chemistry, catalysis, cosmetics, food, batteries, nanotechnologies, medicine and materials use the esrf. Please contact andre rossberg, if you wish to use this software. Looking for online definition of esrf or what esrf stands for. It operates 40 experimental stations in parallel, serving over 3500 scientific users per year. The esrf is a multinational research institute, situated in grenoble, france and financed by 21 countries, mostly european.

To meet the high demands of the experimental stations beamlines, advanced control techniques running. To meet the high demands of the experimental stations beamlines, advanced control techniques running on realtime systems are needed. Software european synchrotron radiation facility esrf. The avizo interface is modelled on the visual programming. We are looking for postdocs with various profiles, interested in instrumental hardware and software development as well as applications of synchrotron radiation in these scientific fields. The software group provides software in the form of development, support, maintenance, and expertise capabilities in the areas of control, data acquisition and data analysis. This software is being designed to complement the thermodynamicenergetic and kinetic information obtained from. For the structure determination of molecular layers on welldefined solid surfaces, i initialized the anarod project in collaboration with olof svensson, rainer wilcke, and claudio ferrero of the scientific software group at esrf. The european research center esrf chose orchestra ppm to facilitate scientific collaboration the esrf is the worlds most intense xray source and a center of excellence for fundamental and innovationdriven research in condensed and living matter science. If the software under development will be used only by the programmer, usability might not be a large concern. The project is developed at the european synchrotron radiation facility by marius retegan. Data analysis european synchrotron radiation facility esrf. Instrumentation software engineer international union of.

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